Sameed Siddiqui

Sameed Siddiqui is a Ph.D. student in the Computational and Systems Biology Program at MIT. His research seeks to bridge computational and molecular biology domains, including development of CRISPR-based diagnostics and of computer vision tools to enable accurate, automatic analysis of clinical assays. He is broadly interested in biotechnology to reduce the cost of healthcare and to enable poverty alleviation.

SELECTED PUBLICATIONS

Discrete SARS-CoV-2 antibody titers track with functional humoral stability

Nature Communications, 2021.
Yannic C Bartsch, Stephanie Fischinger, Sameed M Siddiqui*, Zhilin Chen, Jingyou Yu, Makda Gebre, Caroline Atyeo, Matthew J Gorman, Alex Lee Zhu, Jaewon Kang, John S Burke, Matthew Slein, Matthew J Gluck, Samuel Beger, Yiyuan Hu, Justin Rhee, Eric Petersen, Benjamin Mormann, Michael de St Aubin, Mohammad A Hasdianda, Guruprasad Jambaulikar, Edward W Boyer, Pardis C Sabeti, Dan H Barouch, Boris D Julg, Elon R Musk, Anil S Menon, Douglas A Lauffenburger, Eric J Nilles, Galit Alter

Streamlined inactivation, amplification, and Cas13-based detection of SARS-CoV-2

Nature Communications, 2020.
Jon Arizti-Sanz, Catherine A Freije, Alexandra C Stanton, Brittany A Petros, Chloe K Boehm, Sameed Siddiqui, Bennett M Shaw, Gordon Adams, Tinna-Solveig F Kosoko-Thoroddsen, Molly E Kemball, Jessica N Uwanibe, Fehintola V Ajogbasile, Philomena E Eromon, Robin Gross, Loni Wronka, Katie Caviness, Lisa E Hensley, Nicholas H Bergman, Bronwyn L MacInnis, Christian T Happi, Jacob E Lemieux, Pardis C Sabeti, Cameron Myhrvold

Deployable CRISPR-Cas13a diagnostic tools to detect and report Ebola and Lassa virus cases in real-time

Nature Communications, 2020.
Kayla G Barnes, Anna E Lachenauer, Adam Nitido, Sameed Siddiqui, Robin Gross, Brett Beitzel, Katherine J Siddle, Catherine A Freije, Bonnie Dighero-Kemp, Samar B Mehta, Amber Carter, Jessica Uwanibe, Fehintola Ajogbasile, Testimony Olumade, Ikponmwosa Odia, John Demby Sandi, Mambu Momoh, Hayden C Metsky, Chloe K Boehm, Aaron E Lin, Molly Kemball, Daniel J Park, Luis Branco, Matt Boisen, Brian Sullivan, Mihret F Amare, Abdulwasiu B Tiamiyu, Zahra F Parker, Michael Iroezindu, Donald S Grant, Kayvon Modjarrad, Cameron Myhrvold, Robert F Garry, Gustavo Palacios, Lisa E Hensley, Stephen F Schaffner, Christian T Happi, Andres Colubri, Pardis C Sabeti

Structural variation detection by proximity ligation from formalin-fixed, paraffin-embedded tumor tissue

The Journal of Molecular Diagnostics, 2019.
Christopher J Troll, Nicholas H Putnam, Paul D Hartley, Brandon Rice, Marco Blanchette, Sameed Siddiqui, Javkhlan-Ochir Ganbat, Martin P Powers, Ramesh Ramakrishnan, Christian A Kunder, Carlos D Bustamante, James L Zehnder, Richard E Green, Helio A Costa

Theta oscillations in the human medial temporal lobe during real-world ambulatory movement

Current Biology, 2017.
Zahra M Aghajan, Peter Schuette, Tony A Fields, Michelle E Tran, Sameed M Siddiqui, Nicholas R Hasulak, Thomas K Tcheng, Dawn Eliashiv, Emily A Mankin, John Stern, Itzhak Fried, Nanthia Suthana

SAMEED SIDDIQUI

SELECTED PUBLICATIONS

The Journal of Molecular Diagnostics, 2019. Christopher J Troll, Nicholas H Putnam, Paul D Hartley, Brandon Rice, Marco Blanchette, Sameed Siddiqui, Javkhlan-Ochir Ganbat, Martin P Powers, Ramesh Ramakrishnan, Christian A Kunder, Carlos D Bustamante, James L Zehnder, Richard E Green, Helio A Costa

Current Biology, 2017. Zahra M Aghajan, Peter Schuette, Tony A Fields, Michelle E Tran, Sameed M Siddiqui, Nicholas R Hasulak, Thomas K Tcheng, Dawn Eliashiv, Emily A Mankin, John Stern, Itzhak Fried, Nanthia Suthana

The Journal of Molecular Diagnostics, 2019.
Christopher J Troll, Nicholas H Putnam, Paul D Hartley, Brandon Rice, Marco Blanchette, Sameed Siddiqui, Javkhlan-Ochir Ganbat, Martin P Powers, Ramesh Ramakrishnan, Christian A Kunder, Carlos D Bustamante, James L Zehnder, Richard E Green, Helio A Costa

Current Biology, 2017.
Zahra M Aghajan, Peter Schuette, Tony A Fields, Michelle E Tran, Sameed M Siddiqui, Nicholas R Hasulak, Thomas K Tcheng, Dawn Eliashiv, Emily A Mankin, John Stern, Itzhak Fried, Nanthia Suthana