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SAMEED SIDDIQUI, Ph.D.

2024 Siddiqui, Sameed - Headshot

Sameed Siddiqui is a recent PhD graduate in Computational and Systems Biology from MIT, where he focused on combining immunological, diagnostic, and computational approaches to tackle infectious diseases, particularly SARS-CoV-2. His doctoral work spanned antibody dynamics research, development of novel CRISPR-based diagnostics, and creation of efficient computational models for biological sequences.

Currently completing an MBA at MIT Sloan, Sameed is excited about doing translational science, focusing on the intersection of machine learning and biology. Prior to MIT, his professional experience includes roles at Dovetail Genomics and Google, along with a B.S. in Electrical Engineering from UCLA.

Outside of the lab, Sameed enjoys playing basketball, hiking, and salsa dancing. You’ll also regularly see Sameed attempting to make puns with a variable success rate (sometimes, sadly, even his own puns don’t make him laugh), and day-dreaming of being by the ocean on a warm sunny day.

SELECTED PUBLICATIONS

Discrete SARS-CoV-2 antibody titers track with functional humoral stability

Nature Communications, 2021.
Yannic C Bartsch*, Stephanie Fischinger*, Sameed M Siddiqui*, Zhilin Chen, Jingyou Yu, Makda Gebre, Caroline Atyeo, Matthew J Gorman, Alex Lee Zhu, Jaewon Kang, John S Burke, Matthew Slein, Matthew J Gluck, Samuel Beger, Yiyuan Hu, Justin Rhee, Eric Petersen, Benjamin Mormann, Michael de St Aubin, Mohammad A Hasdianda, Guruprasad Jambaulikar, Edward W Boyer, Pardis C Sabeti, Dan H Barouch, Boris D Julg, Elon R Musk, Anil S Menon, Douglas A Lauffenburger, Eric J Nilles, Galit Alter

Streamlined inactivation, amplification, and Cas13-based detection of SARS-CoV-2

Nature Communications, 2020.
Jon Arizti-Sanz, Catherine A Freije, Alexandra C Stanton, Brittany A Petros, Chloe K Boehm, Sameed Siddiqui, Bennett M Shaw, Gordon Adams, Tinna-Solveig F Kosoko-Thoroddsen, Molly E Kemball, Jessica N Uwanibe, Fehintola V Ajogbasile, Philomena E Eromon, Robin Gross, Loni Wronka, Katie Caviness, Lisa E Hensley, Nicholas H Bergman, Bronwyn L MacInnis, Christian T Happi, Jacob E Lemieux, Pardis C Sabeti, Cameron Myhrvold

Deployable CRISPR-Cas13a diagnostic tools to detect and report Ebola and Lassa virus cases in real-time

Nature Communications, 2020.
Kayla G Barnes, Anna E Lachenauer, Adam Nitido, Sameed Siddiqui, Robin Gross, Brett Beitzel, Katherine J Siddle, Catherine A Freije, Bonnie Dighero-Kemp, Samar B Mehta, Amber Carter, Jessica Uwanibe, Fehintola Ajogbasile, Testimony Olumade, Ikponmwosa Odia, John Demby Sandi, Mambu Momoh, Hayden C Metsky, Chloe K Boehm, Aaron E Lin, Molly Kemball, Daniel J Park, Luis Branco, Matt Boisen, Brian Sullivan, Mihret F Amare, Abdulwasiu B Tiamiyu, Zahra F Parker, Michael Iroezindu, Donald S Grant, Kayvon Modjarrad, Cameron Myhrvold, Robert F Garry, Gustavo Palacios, Lisa E Hensley, Stephen F Schaffner, Christian T Happi, Andres Colubri, Pardis C Sabeti

Structural variation detection by proximity ligation from formalin-fixed, paraffin-embedded tumor tissue

The Journal of Molecular Diagnostics, 2019.
Christopher J Troll, Nicholas H Putnam, Paul D Hartley, Brandon Rice, Marco Blanchette, Sameed Siddiqui, Javkhlan-Ochir Ganbat, Martin P Powers, Ramesh Ramakrishnan, Christian A Kunder, Carlos D Bustamante, James L Zehnder, Richard E Green, Helio A Costa

Theta oscillations in the human medial temporal lobe during real-world ambulatory movement

Current Biology, 2017.
Zahra M Aghajan, Peter Schuette, Tony A Fields, Michelle E Tran, Sameed M Siddiqui, Nicholas R Hasulak, Thomas K Tcheng, Dawn Eliashiv, Emily A Mankin, John Stern, Itzhak Fried, Nanthia Suthana

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