• Home
  • Research
    • Projects
    • Publications
  • Outreach
    • Equity and Outreach
      • Education
    • Holiday Card
    • Videos
  • Team
    • Team
    • Alumni
    • Collaborators
    • Opportunities
  • Giving
Sabeti Lab Sabeti Lab
  • Home
  • Research
    • Projects
    • Publications
  • Outreach
    • Equity and Outreach
      • Education
    • Holiday Card
    • Videos
  • Team
    • Team
    • Alumni
    • Collaborators
    • Opportunities
  • Giving

CHRISTOPHER TOMKINS-TINCH, Ph.D.

ChrisT

Christopher Tomkins-Tinch is a software engineer in the Infectious Disease and Microbiome Program at the Broad Institute of MIT and Harvard, where he works on computational methods for viral biology research and software tools to make methods usable and scalable.

Chris earned his Ph.D. in Organismic and Evolutionary Biology at Harvard University, with support from the NSF Graduate Research Fellowship Program.

Prior to the Sabeti lab he was the Product and Software lead at a small Silicon Valley medical device company, and a software and electronic design consultant. He has developed automated laboratory instruments, high-precision infrared field radiometers, Mac apps, web scrapers, and social media tech. In his spare time he enjoys cooking and being outdoors.

SELECTED PUBLICATIONS

Bioconda: sustainable and comprehensive software distribution for the life sciences

Nature Methods. 2018.
Grüning, B., Dale, R., Sjödin, A., Chapman, B. A., Rowe, J., Tomkins-Tinch, C.H., Valieris, R., Köster, J., and The Bioconda Team.

Genomic Epidemiology Reveals Multiple Introductions to Zika Virus into the United States.

Nature. 2017.
Grubaugh ND, Ladner JT, Kraemer MUG, Dudas G, Tan AL, Gangavarapu K, Wiley MR, White S, Thézé J, Magnani DM, Prieto K, Reyes D, Bingham AM, Paul LM, Robles-Sikisaka R, Oliveira G, Pronty D, Barcellona CM, Metsky HC, Baniecki ML, Barnes KG, Chak B, Freije CA, Gladden-Young A, Gnirke A, Luo C, MacInnis B, Matranga CB, Park DJ, Qu J, Schaffner SF, Tomkins-Tinch C, West KL, Winnicki SM, Wohl S, Yozwiak NL, Quick J, Fauver JR, Khan K, Brent SE, Reiner RC Jr, Lichtenberger PN, Ricciardi MJ, Bailey VK, Watkins DI, Cone MR, Kopp EW 4th, Hogan KN, Cannons AC, Jean R, Monaghan AJ, Garry RF, Loman NJ, Faria NR, Porcelli MC, Vasquez C, Nagle ER, Cummings DAT, Stanek D, Rambaut A, Sanchez-Lockhart M, Sabeti PC, Gillis LD, Michael SF, Bedford T, Pybus OG, Isern S, Palacios G, Andersen KG.

Zika Virus Evolution and Spread in the Americas.

Nature. 2017.
Metsky HC, Matranga CB, Wohl S, Schaffner SF, Freije CA, Winnicki SM, West K, Qu J, Baniecki ML, Gladden-Young A, Lin AE, Tomkins-Tinch CH, Ye SH, Park DJ, Luo CY, Barnes K, Shah RR, Chak B, Barbosa-Lima G, Delatorre E, Vieira YR, Paul LM, Tan AL, Barcellona CM, Porcelli MC, Vasquez C, Cannons AC, Cone MR, Hogan KN, Kopp EW, Anzinger JJ, Garcia KF, Parham LA, Ramírez RMG, Montoya MCM, Rojas DP, Brown CM, Hennigan S, Sabina B, Scotland S, Gangavarapu K, Grubaugh ND, Oliveira G, Robles-Sikisaka R, Rambaut A, Gehrke L, Smole S, Halloran ME, Villar L, Mattar S, Lorenzana I, Cerbino-Neto J, Valim C, Degrave W, Bozza PT, Gnirke A, Andersen KG, Isern S, Michael SF, Bozza FA, Souza TML, Bosch I, Yozwiak NL, MacInnis BL, Sabeti PC.

Ebola Virus Epidemiology and Evolution in Nigeria.

Journal of Infectious Diseases. 2016.
Folarin OA, Ehichioya D, Schaffner SF, Winnicki SM, Wohl S, Eromon P, West KL, Gladden-Young A, Oyejide NE, Matranga CB, Deme AB, James A, Tomkins-Tinch C, Onyewurunwa K, Ladner JT, Palacios G, Nosamiefan I, Andersen KG, Omilabu S, Park DJ, Yozwiak NL, Nasidi A, Garry RF, Tomori O, Sabeti PC, Happi CT.

Ebola Virus Epidemiology, Transmission, and Evolution during Seven Months in Sierra Leone.

Cell. 2015.
Park DJ, Dudas G, Wohl S, Goba A, Whitmer SL, Andersen KG, Sealfon RS, Ladner JT, Kugelman JR, Matranga CB, Winnicki SM, Qu J, Gire SK, Gladden-Young A, Jalloh S, Nosamiefan D, Yozwiak NL, Moses LM, Jiang PP, Lin AE, Schaffner SF, Bird B, Towner J, Mamoh M, Gbakie M, Kanneh L, Kargbo D, Massally JL, Kamara FK, Konuwa E, Sellu J, Jalloh AA, Mustapha I, Foday M, Yillah M, Erickson BR, Sealy T, Blau D, Paddock C, Brault A, Amman B, Basile J, Bearden S, Belser J, Bergeron E, Campbell S, Chakrabarti A, Dodd K, Flint M, Gibbons A, Goodman C, Klena J, McMullan L, Morgan L, Russell B, Salzer J, Sanchez A Wang D, Jungreis I, Tomkins-Tinch C, Kislyuk A, Lin MF, Chapman S, MacInnis B, Matthews A, Bochicchio J, Hensley LE, Kuhn JH, Nusbaum C, Schieffelin JS, Birren BW, Forget M, Nichol ST, Palacios GF, Ndiaye D, Happi C, Gevao SM, Vandi MA, Kargbo B, Holmes EC, Bedford T, Gnirke A, Ströher U, Rambaut A, Garry RF, Sabeti PC.

Addressing extensibility requirements for health informatics data

SIGHIT Record. March 2012. Volume 2 Issue 1
Mallikarjun Shankar, Christopher Tomkins-Tinch

Sensorpedia: Information sharing across incompatible sensor systems

CTS '09: Proceedings of the 2009 International Symposium on Collaborative Technologies and Systems. May 18-22, 2009, Baltimore, Maryland.
B. L. Gorman, D. R. Resseguie, C. Tomkins-Tinch

(pending) Automated Sample Processing, Fluid Distribution, and Sedimentation Assay.

PCT/US2014/015170
Ulrich Schaff; Christopher Tomkins-Tinch; Jason Sauers; Greg Sommer

(pending) Methods and Devices for Processing Samples and Counting Cells.

PCT/US2013/068991
Ulrich Schaff; Greg Sommer; and Christopher Tomkins-Tinch

Click here for a full publication list.

Contact Us

Send us an email and we'll get back to you, asap.

Send Message

Navigation

Home
Research
Outreach
Team
News
Pardis

Location

  • Broad Institute of MIT and Harvard
  • 415 Main Street, Cambridge, Massachusetts 02142

Community

Recent Tweets

News

  • Pardis interviews with HuffPost Entertainment
  • Watch Pardis’ TED talk!
  • Sabeti Lab researchers publish paper on Lassa virus in Cell
  • Mahan Nekoui, undergrad in the lab, has been named one of top 20 under 20 by Plan Canada
  • Sabeti Lab Researchers Publish Analysis of Ebola Virus
  • Dr. Sabeti announced as HHMI investigator
Read the blog!

© 2022 — sabetilab.org

  • Careers
  • Team
  • Collaborators
  • Education
  • Publications
  • Research
  • Giving