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CHRISTOPHER TOMKINS-TINCH

ChrisT

Christopher Tomkins-Tinch is a Ph.D student in the Department of Organismic and Evolutionary Biology at Harvard University, supported by an NSF Graduate Research Fellowship grant. Prior to graduate school he was a software engineer in the Sabeti Lab working with scientists of the group to transition computational research methods into usable software tools.

Chris graduated with a B.S. in Bioinformatics from the Rochester Institute of Technology. Prior to the Sabeti lab he was the Product and Software lead at a small Silicon Valley medical device company, and a software and electronic design consultant. He has developed automated laboratory instruments, high-precision infrared field radiometers, Mac apps, web scrapers, and social media tech. In his spare time he enjoys cooking and being outdoors.

SELECTED PUBLICATIONS

Bioconda: sustainable and comprehensive software distribution for the life sciences

Nature Methods. 2018.
Grüning, B., Dale, R., Sjödin, A., Chapman, B. A., Rowe, J., Tomkins-Tinch, C.H., Valieris, R., Köster, J., and The Bioconda Team.

Genomic Epidemiology Reveals Multiple Introductions to Zika Virus into the United States.

Nature. 2017.
Grubaugh ND, Ladner JT, Kraemer MUG, Dudas G, Tan AL, Gangavarapu K, Wiley MR, White S, Thézé J, Magnani DM, Prieto K, Reyes D, Bingham AM, Paul LM, Robles-Sikisaka R, Oliveira G, Pronty D, Barcellona CM, Metsky HC, Baniecki ML, Barnes KG, Chak B, Freije CA, Gladden-Young A, Gnirke A, Luo C, MacInnis B, Matranga CB, Park DJ, Qu J, Schaffner SF, Tomkins-Tinch C, West KL, Winnicki SM, Wohl S, Yozwiak NL, Quick J, Fauver JR, Khan K, Brent SE, Reiner RC Jr, Lichtenberger PN, Ricciardi MJ, Bailey VK, Watkins DI, Cone MR, Kopp EW 4th, Hogan KN, Cannons AC, Jean R, Monaghan AJ, Garry RF, Loman NJ, Faria NR, Porcelli MC, Vasquez C, Nagle ER, Cummings DAT, Stanek D, Rambaut A, Sanchez-Lockhart M, Sabeti PC, Gillis LD, Michael SF, Bedford T, Pybus OG, Isern S, Palacios G, Andersen KG.

Zika Virus Evolution and Spread in the Americas.

Nature. 2017.
Metsky HC, Matranga CB, Wohl S, Schaffner SF, Freije CA, Winnicki SM, West K, Qu J, Baniecki ML, Gladden-Young A, Lin AE, Tomkins-Tinch CH, Ye SH, Park DJ, Luo CY, Barnes K, Shah RR, Chak B, Barbosa-Lima G, Delatorre E, Vieira YR, Paul LM, Tan AL, Barcellona CM, Porcelli MC, Vasquez C, Cannons AC, Cone MR, Hogan KN, Kopp EW, Anzinger JJ, Garcia KF, Parham LA, Ramírez RMG, Montoya MCM, Rojas DP, Brown CM, Hennigan S, Sabina B, Scotland S, Gangavarapu K, Grubaugh ND, Oliveira G, Robles-Sikisaka R, Rambaut A, Gehrke L, Smole S, Halloran ME, Villar L, Mattar S, Lorenzana I, Cerbino-Neto J, Valim C, Degrave W, Bozza PT, Gnirke A, Andersen KG, Isern S, Michael SF, Bozza FA, Souza TML, Bosch I, Yozwiak NL, MacInnis BL, Sabeti PC.

Ebola Virus Epidemiology and Evolution in Nigeria.

Journal of Infectious Diseases. 2016.
Folarin OA, Ehichioya D, Schaffner SF, Winnicki SM, Wohl S, Eromon P, West KL, Gladden-Young A, Oyejide NE, Matranga CB, Deme AB, James A, Tomkins-Tinch C, Onyewurunwa K, Ladner JT, Palacios G, Nosamiefan I, Andersen KG, Omilabu S, Park DJ, Yozwiak NL, Nasidi A, Garry RF, Tomori O, Sabeti PC, Happi CT.

Ebola Virus Epidemiology, Transmission, and Evolution during Seven Months in Sierra Leone.

Cell. 2015.
Park DJ, Dudas G, Wohl S, Goba A, Whitmer SL, Andersen KG, Sealfon RS, Ladner JT, Kugelman JR, Matranga CB, Winnicki SM, Qu J, Gire SK, Gladden-Young A, Jalloh S, Nosamiefan D, Yozwiak NL, Moses LM, Jiang PP, Lin AE, Schaffner SF, Bird B, Towner J, Mamoh M, Gbakie M, Kanneh L, Kargbo D, Massally JL, Kamara FK, Konuwa E, Sellu J, Jalloh AA, Mustapha I, Foday M, Yillah M, Erickson BR, Sealy T, Blau D, Paddock C, Brault A, Amman B, Basile J, Bearden S, Belser J, Bergeron E, Campbell S, Chakrabarti A, Dodd K, Flint M, Gibbons A, Goodman C, Klena J, McMullan L, Morgan L, Russell B, Salzer J, Sanchez A Wang D, Jungreis I, Tomkins-Tinch C, Kislyuk A, Lin MF, Chapman S, MacInnis B, Matthews A, Bochicchio J, Hensley LE, Kuhn JH, Nusbaum C, Schieffelin JS, Birren BW, Forget M, Nichol ST, Palacios GF, Ndiaye D, Happi C, Gevao SM, Vandi MA, Kargbo B, Holmes EC, Bedford T, Gnirke A, Ströher U, Rambaut A, Garry RF, Sabeti PC.

Addressing extensibility requirements for health informatics data

SIGHIT Record. March 2012. Volume 2 Issue 1
Mallikarjun Shankar, Christopher Tomkins-Tinch

Sensorpedia: Information sharing across incompatible sensor systems

CTS '09: Proceedings of the 2009 International Symposium on Collaborative Technologies and Systems. May 18-22, 2009, Baltimore, Maryland.
B. L. Gorman, D. R. Resseguie, C. Tomkins-Tinch

(pending) Automated Sample Processing, Fluid Distribution, and Sedimentation Assay.

PCT/US2014/015170
Ulrich Schaff; Christopher Tomkins-Tinch; Jason Sauers; Greg Sommer

(pending) Methods and Devices for Processing Samples and Counting Cells.

PCT/US2013/068991
Ulrich Schaff; Greg Sommer; and Christopher Tomkins-Tinch

Click here for a full publication list.

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